How Do I Control Red Cyano Bacteria in My Reef Tank?
Care Feb 7, 2026

How Do I Control Red Cyano Bacteria in My Reef Tank?

Quick Answer

Red cyano is usually caused by excess nutrients and low flow. Fix it by increasing water circulation, reducing feeding, and manually removing it during water changes.

Red cyanobacteria (cyano) is one of the most frustrating problems reef keepers face. Despite its name, cyano isn't actually algae—it's a photosynthetic bacteria that forms slimy red or purple mats across your sand, rocks, and even corals. The good news? It's completely controllable with the right approach.

Why You Have Cyano

Cyano thrives when these conditions exist together:

  • Excess nutrients – Elevated phosphates and nitrates feed cyano growth
  • Low water flow – Dead spots where water doesn't circulate well
  • Old lighting – Bulbs past their prime emit spectrum shifts cyano loves
  • Overfeeding – Uneaten food breaks down into nutrients
  • Dirty filter media – Trapped organics leaching back into water

Step-by-Step Cyano Elimination

1. Increase Water Flow

Cyano hates movement. Add a powerhead or reposition existing ones to eliminate dead spots. Target areas where cyano accumulates most—usually the sandbed and lower rockwork.

2. Manual Removal

During water changes, siphon out as much cyano as possible. Use a turkey baster to blast it off rocks before siphoning. Don't just stir it up—remove it from the tank entirely.

3. Reduce Feeding

Cut back feeding to once daily and only what fish consume in 2 minutes. Consider fasting one day per week. Less food means fewer nutrients fueling cyano.

4. Test and Address Nutrients

Check phosphate and nitrate levels. Ideally:

  • Phosphate: 0.03-0.1 ppm
  • Nitrate: 5-10 ppm

If elevated, increase water changes, run GFO media, or add a refugium with chaeto algae to outcompete the cyano. Track your parameters over time with the ReefBay app to identify patterns.

5. Clean Your Filtration

Replace or rinse filter socks weekly. Clean protein skimmer cups. Old, dirty media becomes a nutrient source rather than removing nutrients.

6. Consider Chemical Treatments

Products like Chemiclean or Red Slime Remover work by starving cyano of oxygen. They're effective but treat the symptom, not the cause. Only use after addressing the underlying issues, or cyano will return.

Prevention Going Forward

Once you've beaten cyano, keep it away by:

  • Maintaining strong, varied water flow
  • Keeping up with regular water changes
  • Not overfeeding your fish
  • Running an efficient protein skimmer
  • Replacing bulbs on schedule (every 9-12 months for T5s)

A healthy clean-up crew also helps by consuming organics before they break down. Cerith snails and nassarius snails are particularly good at keeping sandbeds clean.

Cyano is annoying, but it's also a signal that something in your tank needs attention. Fix the root cause and you'll have a cyano-free reef.

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